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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
22
ATAC-seq
17
DNase-seq
1
FAIRE-seq
Assay category
90
DNA binding
40
DNA accessibility
Target of assay
58
transcription factor
30
histone
30
histone modification
17
RNA binding protein
16
narrow histone mark
14
broad histone mark
11
chromatin remodeller
Date released
27
December, 2018
18
June, 2019
15
January, 2019
14
December, 2017
14
October, 2019
14
September, 2018
12
November, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
377
bam
356
bigWig
317
fastq
205
bed narrowPeak
156
tsv
130
bigBed narrowPeak
80
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
130
Homo sapiens
Biosample type
61
primary cell
55
cell line
14
in vitro differentiated cells
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
130
AMP
Genome assembly (visualization)
129
GRCh38
124
hg19
Lab
130
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 12 more…
cell line
GM12878
54
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
See all biosamples
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