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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
42
DNase-seq
1
FAIRE-seq
Assay category
99
DNA binding
43
DNA accessibility
Target of assay
95
histone
95
histone modification
61
broad histone mark
34
narrow histone mark
4
RNA binding protein
4
transcription factor
Date released
59
October, 2019
45
May, 2019
36
June, 2019
2
November, 2017
Available data
229
bam
217
bigWig
164
bed narrowPeak
142
bigBed narrowPeak
62
tsv
46
bed broadPeak
46
bigBed broadPeak
44
bed bed3+
4
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
142
Homo sapiens
Biosample type
126
tissue
16
primary cell
Organ
354
liver
97
kidney
91
heart
89
pancreas
84
limb
82
vasculature
78
blood vessel
70
epithelium
65
brain
54
blood
54
bodily fluid
47
musculature of body
27
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
142
AMP
Genome assembly (visualization)
142
hg19
141
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
tibial nerve
24
2
tibial artery
18
2
muscle of leg
6
13
muscle of arm
17
ascending aorta
13
1
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primary cell
endothelial cell of umbilical vein
10
2
1
brain microvascular endothelial cell
2
1
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