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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
22
ATAC-seq
17
DNase-seq
3
FAIRE-seq
Assay category
88
DNA binding
42
DNA accessibility
Target of assay
84
histone
84
histone modification
52
broad histone mark
32
narrow histone mark
4
RNA binding protein
4
transcription factor
Date released
40
May, 2019
October, 2018
40
October, 2019
17
August, 2017
14
September, 2018
9
June, 2019
5
September, 2017
3
November, 2018
2
November, 2017
Available data
816
bam
731
bigWig
483
tsv
437
fastq
303
bed narrowPeak
130
bigBed narrowPeak
80
zippedFastqFolder
40
bed bed3+
34
bed broadPeak
25
tagAlign
20
bigBed broadPeak
10
hic
9
bedpe bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
124
Homo sapiens
Biosample type
84
tissue
39
primary cell
7
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
51
pancreas
47
musculature of body
26
nerve
25
artery
23
connective tissue
18
ureter
13
spleen
13
vein
6
eye
5
adipose tissue
Project
130
AMP
Genome assembly (visualization)
127
GRCh38
127
hg19
Lab
130
AMP-T2D consortium
Audit category:
4
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2018
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
tibial artery
18
2
pancreas
12
2
1
ascending aorta
13
1
thoracic aorta
12
aorta
11
+ See 3 more…
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 2 more…
cell line
Panc1
6
1
See all biosamples
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