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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
62
DNase-seq
1
FAIRE-seq
Assay category
158
DNA binding
63
DNA accessibility
Target of assay
147
histone
147
histone modification
92
broad histone mark
55
narrow histone mark
11
transcription factor
9
RNA binding protein
Date released
63
June, 2019
63
November, 2017
46
April, 2019
40
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
454
bam
446
bigWig
394
bed narrowPeak
221
bigBed narrowPeak
194
tsv
124
tagAlign
77
bed broadPeak
68
bigBed broadPeak
65
bed bed3+
21
fastq
10
bed bedMethyl
10
bigBed bedMethyl
3
bedpe bed3+
3
hdf5
3
hic
1
bed bed3
1
tagAlign bed3+
Organism
221
Homo sapiens
Biosample type
204
tissue
17
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
85
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
221
AMP
Genome assembly (visualization)
220
GRCh38
156
hg19
Lab
221
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
heart left ventricle
28
3
heart
7
18
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
+ See 21 more…
primary cell
cardiac fibroblast
3
3
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
+ See 1 more…
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