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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
ATAC-seq
Assay category
15
DNA binding
4
DNA accessibility
Target of assay
9
histone
9
histone modification
6
RNA binding protein
6
transcription factor
5
narrow histone mark
4
broad histone mark
Date released
9
June, 2019
5
October, 2018
3
October, 2019
2
August, 2017
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
19
Homo sapiens
Biosample type
9
primary cell
8
tissue
2
in vitro differentiated cells
Organ
301
liver
89
brain
84
pancreas
68
blood vessel
68
vasculature
64
heart
56
epithelium
54
blood
54
bodily fluid
48
limb
26
kidney
24
nerve
21
artery
19
connective tissue
14
musculature of body
12
spleen
11
vein
8
adipose tissue
2
eye
Project
19
AMP
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
ATAC-seq
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
tissue
omental fat pad
3
subcutaneous adipose tissue
2
1
adipose tissue
1
1
in vitro differentiated cells
adipocyte
2
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