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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
22
ChIP-seq
17
DNase-seq
1
FAIRE-seq
Assay category
40
DNA accessibility
22
DNA binding
Target of assay
17
histone
17
histone modification
10
narrow histone mark
7
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
18
June, 2019
December, 2017
14
October, 2019
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
298
bam
285
bigWig
238
fastq
156
tsv
135
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
62
Homo sapiens
Biosample type
61
primary cell
1
cell line
Organ
308
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
62
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
62
AMP
Genome assembly (visualization)
61
GRCh38
56
hg19
Lab
62
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
62 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
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cell line
glomerular visceral epithelial cell
1
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