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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
23
ATAC-seq
21
DNase-seq
1
FAIRE-seq
Assay category
374
DNA binding
45
DNA accessibility
Target of assay
319
transcription factor
81
recombinant protein
60
RNA binding protein
52
histone
52
histone modification
28
broad histone mark
24
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
253
November, 2017
51
November, 2018
50
December, 2017
19
June, 2019
14
October, 2019
14
September, 2018
9
August, 2017
5
September, 2017
4
May, 2019
Available data
972
bam
899
bigWig
707
fastq
573
bed narrowPeak
419
bigBed narrowPeak
325
tsv
89
tagAlign
84
bed broadPeak
84
bigBed broadPeak
80
zippedFastqFolder
29
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
7
bedpe bed3+
4
tar
3
cool
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
419
Homo sapiens
Biosample type
294
cell line
62
primary cell
49
tissue
14
in vitro differentiated cells
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
419
AMP
Genome assembly (visualization)
409
hg19
386
GRCh38
Lab
419
AMP-T2D consortium
Audit category:
27
inconsistent control
5
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
419 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
293
glomerular visceral epithelial cell
1
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 13 more…
tissue
liver
38
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
See all biosamples
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