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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
17
DNase-seq
7
ChIP-seq
1
FAIRE-seq
Assay category
40
DNA accessibility
7
DNA binding
Target of assay
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
16
June, 2019
14
September, 2018
5
September, 2017
4
October, 2019
3
August, 2017
2
December, 2017
2
November, 2017
1
May, 2019
Available data
224
bam
211
bigWig
206
fastq
156
tsv
80
zippedFastqFolder
63
bed narrowPeak
47
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
47
Homo sapiens
Biosample type
44
primary cell
2
in vitro differentiated cells
1
cell line
Organ
323
liver
82
kidney
53
blood
53
bodily fluid
47
epithelium
42
pancreas
38
heart
36
brain
36
limb
33
musculature of body
19
connective tissue
18
ureter
17
vasculature
14
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
47
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
47
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
47 results
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ATAC-seq
DNase-seq
ChIP-seq
FAIRE-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
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in vitro differentiated cells
hepatocyte
2
cell line
glomerular visceral epithelial cell
1
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