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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
41
DNase-seq
1
ATAC-seq
Assay category
400
DNA binding
42
DNA accessibility
Target of assay
314
transcription factor
83
histone
83
histone modification
81
recombinant protein
55
RNA binding protein
55
broad histone mark
28
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
46
October, 2019
34
June, 2019
6
August, 2017
6
May, 2019
Available data
795
bam
713
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
442
Homo sapiens
Biosample type
293
cell line
133
tissue
14
in vitro differentiated cells
2
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
442
AMP
Genome assembly (visualization)
438
hg19
409
GRCh38
Lab
442
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
442 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
tibial nerve
24
2
tibial artery
18
2
muscle of leg
6
13
muscle of arm
17
+ See 3 more…
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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