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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
22
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
53
DNA binding
32
DNA accessibility
Target of assay
43
histone
43
histone modification
26
broad histone mark
17
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
40
October, 2018
14
September, 2018
11
August, 2017
7
October, 2019
5
September, 2017
4
June, 2019
3
November, 2018
1
May, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
85
Homo sapiens
Biosample type
56
tissue
22
primary cell
7
cell line
Organ
349
liver
104
kidney
94
heart
85
pancreas
84
limb
83
vasculature
79
blood vessel
76
brain
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
85
AMP
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
85
AMP-T2D consortium
Audit category:
5
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
26
4
endocrine pancreas
14
pancreas
7
2
1
islet of Langerhans
1
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
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