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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
11
DNase-seq
1
FAIRE-seq
Assay category
32
DNA binding
12
DNA accessibility
Target of assay
30
histone
30
histone modification
19
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
May, 2019
33
October, 2019
7
June, 2019
4
November, 2017
Available data
135
bam
116
bigWig
94
bed narrowPeak
68
tsv
44
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
44
Homo sapiens
Biosample type
23
tissue
21
primary cell
Organ
358
liver
102
brain
100
kidney
90
pancreas
79
heart
78
limb
72
epithelium
54
blood
54
bodily fluid
44
vasculature
41
musculature of body
40
blood vessel
28
connective tissue
26
nerve
22
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
44
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
44
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
tibial artery
18
2
coronary artery
2
ascending aorta
1
primary cell
endothelial cell of umbilical vein
10
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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