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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ChIP-seq
2
DNase-seq
2
Hi-C
Assay category
343
DNA binding
2
3D chromatin structure
2
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
20
histone
20
histone modification
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
242
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
5
October, 2019
1
August, 2021
1
November, 2019
Available data
564
bam
504
bigWig
419
fastq
387
bed narrowPeak
345
bigBed narrowPeak
119
tsv
51
bed broadPeak
51
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
347
Homo sapiens
Biosample type
368
tissue
347
cell line
94
primary cell
14
in vitro differentiated cells
Organ
287
liver
54
blood
54
bodily fluid
5
pancreas
2
epithelium
1
kidney
Project
347
AMP
Genome assembly (visualization)
343
hg19
313
GRCh38
Lab
346
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
347 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
cell line
HepG2
286
1
GM12878
54
Panc1
3
1
EndoC_BH1
1
glomerular visceral epithelial cell
1
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