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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
ChIP-seq
2
DNase-seq
Assay category
316
DNA binding
2
DNA accessibility
Target of assay
303
transcription factor
81
recombinant protein
59
RNA binding protein
28
chromatin remodeller
20
histone
20
histone modification
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
242
November, 2017
56
November, 2018
December, 2018
15
January, 2019
5
October, 2019
Available data
537
bam
477
bigWig
391
fastq
360
bed narrowPeak
318
bigBed narrowPeak
119
tsv
51
bed broadPeak
51
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
318
Homo sapiens
Biosample type
354
tissue
318
cell line
88
primary cell
10
in vitro differentiated cells
Organ
286
liver
27
blood
27
bodily fluid
4
pancreas
1
epithelium
1
kidney
Project
318
AMP
Genome assembly (visualization)
314
hg19
286
GRCh38
Lab
318
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
month_released!
December, 2018
BIOSAMPLE
ASSAY
318 results
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ChIP-seq
DNase-seq
cell line
HepG2
286
GM12878
27
Panc1
3
1
glomerular visceral epithelial cell
1
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