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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
331
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
242
November, 2017
51
November, 2018
40
December, 2017
2
August, 2017
2
June, 2019
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
337
Homo sapiens
Biosample type
286
cell line
42
tissue
7
in vitro differentiated cells
2
primary cell
Organ
337
liver
92
kidney
69
brain
62
epithelium
61
pancreas
60
heart
54
blood
54
bodily fluid
50
limb
42
vasculature
39
musculature of body
38
blood vessel
24
connective tissue
18
ureter
11
artery
10
adipose tissue
10
nerve
9
spleen
8
vein
6
eye
Project
337
AMP
Genome assembly (visualization)
333
hg19
305
GRCh38
Lab
337
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
337 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
286
tissue
liver
34
2
right lobe of liver
4
1
1
in vitro differentiated cells
hepatocyte
7
primary cell
hepatic stellate cell
1
hepatocyte
1
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