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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
271
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
271
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
183
November, 2017
50
December, 2017
36
November, 2018
6
August, 2017
2
June, 2019
Available data
599
bam
541
bigWig
382
fastq
360
bed narrowPeak
277
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
277
Homo sapiens
Biosample type
212
cell line
49
tissue
14
in vitro differentiated cells
2
primary cell
Organ
277
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
47
musculature of body
28
connective tissue
27
blood
27
bodily fluid
26
nerve
25
artery
18
ureter
13
vein
10
adipose tissue
10
spleen
6
eye
Project
277
AMP
Genome assembly (visualization)
276
hg19
245
GRCh38
Lab
277
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
recombinant protein
month_released!
December, 2018
BIOSAMPLE
ASSAY
277 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
212
tissue
liver
38
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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