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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
26
DNase-seq
24
ATAC-seq
Assay category
329
DNA binding
50
DNA accessibility
Target of assay
338
transcription factor
recombinant protein
71
RNA binding protein
67
histone
67
histone modification
34
narrow histone mark
33
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
185
November, 2017
43
June, 2019
41
November, 2018
27
December, 2018
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
10
October, 2019
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1298
bam
1224
bigWig
893
fastq
712
bed narrowPeak
470
tsv
379
bigBed narrowPeak
154
tagAlign
153
zippedFastqFolder
97
bed broadPeak
97
bigBed broadPeak
60
bed bed3+
12
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
379
Homo sapiens
Biosample type
tissue
274
cell line
88
primary cell
17
in vitro differentiated cells
Organ
228
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
379
AMP
Genome assembly (visualization)
372
hg19
342
GRCh38
Lab
379
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
target.investigated_as!
recombinant protein
organ_slims!
vasculature
biosample_type!
tissue
BIOSAMPLE
ASSAY
379 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
212
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 19 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
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