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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
354
ChIP-seq
Assay category
354
DNA binding
Target of assay
390
histone
390
histone modification
354
transcription factor
242
broad histone mark
148
narrow histone mark
83
RNA binding protein
81
recombinant protein
24
chromatin remodeller
5
other context
5
other post-translational modification
Date released
236
November, 2017
51
November, 2018
33
December, 2017
15
October, 2018
5
April, 2019
5
May, 2019
4
June, 2019
3
December, 2018
2
August, 2017
Available data
440
bigWig
434
bam
413
bed narrowPeak
403
fastq
354
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
19
bed bed3+
9
tagAlign
3
tar
Organism
354
Homo sapiens
Biosample type
277
cell line
65
tissue
10
primary cell
2
in vitro differentiated cells
Organ
314
liver
blood
51
bodily fluid
10
pancreas
8
heart
7
epithelium
6
connective tissue
6
spleen
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
2
kidney
1
artery
1
eye
Project
354
AMP
Genome assembly (visualization)
350
hg19
321
GRCh38
Lab
354
AMP-T2D consortium
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
BIOSAMPLE
ASSAY
354 results
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Clear Filters
ChIP-seq
cell line
HepG2
277
tissue
liver
33
body of pancreas
9
spleen
6
heart left ventricle
5
omental fat pad
3
+ See 7 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
in vitro differentiated cells
hepatocyte
2
See all biosamples
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