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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
35
DNA accessibility
12
Transcription
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
13
July, 2019
7
October, 2017
2
November, 2018
Available data
243
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
219
Homo sapiens
Biosample type
202
tissue
17
primary cell
Organ
622
pancreas
621
liver
569
connective tissue
425
adipose tissue
299
epithelium
219
brain
184
heart
153
vasculature
148
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
219
AMP
Genome assembly (visualization)
214
GRCh38
156
hg19
Lab
219
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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