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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
804
total RNA-seq
463
ChIP-seq
16
small RNA-seq
8
WGBS
Assay category
820
Transcription
463
DNA binding
DNA accessibility
8
DNA methylation
Target of assay
449
histone
449
histone modification
240
narrow histone mark
209
broad histone mark
14
transcription factor
12
RNA binding protein
Date released
444
February, 2021
170
May, 2020
153
October, 2019
114
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
55
July, 2019
40
May, 2024
38
May, 2021
20
August, 2017
19
November, 2019
14
October, 2018
9
March, 2020
Available data
1662
bam
1548
bigWig
1075
tsv
595
bed narrowPeak
377
bigBed narrowPeak
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1291
Homo sapiens
Biosample type
1291
tissue
303
primary cell
145
cell line
130
in vitro differentiated cells
Organ
455
connective tissue
397
adipose tissue
197
pancreas
184
liver
166
brain
126
heart
62
blood vessel
62
vasculature
58
bone element
53
limb
28
nerve
24
musculature of body
22
kidney
21
artery
1
pituitary gland
Project
1289
AMP
2
T1D
Genome assembly (visualization)
1260
GRCh38
1192
hg19
Lab
1251
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
fastq
BIOSAMPLE
ASSAY
1291 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
liver
147
32
1
islet of Langerhans
169
8
bone tissue
58
left cardiac atrium
40
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