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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
616
ChIP-seq
16
WGBS
16
small RNA-seq
Assay category
917
Transcription
616
DNA binding
DNA accessibility
16
DNA methylation
Target of assay
523
histone modification
522
histone
268
narrow histone mark
254
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
174
August, 2017
170
May, 2020
153
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
58
November, 2017
55
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
19
November, 2019
13
November, 2018
9
March, 2020
6
April, 2018
6
January, 2019
6
October, 2017
3
December, 2018
Available data
1662
bam
1548
bigWig
1075
tsv
595
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1543
Homo sapiens
Biosample type
1549
tissue
517
cell line
505
primary cell
246
in vitro differentiated cells
3
stem cell
Organ
475
connective tissue
417
adipose tissue
357
pancreas
241
liver
173
brain
126
heart
62
blood vessel
62
vasculature
58
bone element
53
limb
28
nerve
24
musculature of body
22
kidney
21
artery
14
spleen
1
pituitary gland
Project
1547
AMP
2
T1D
Genome assembly (visualization)
1518
GRCh38
1441
hg19
Lab
1509
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
1549 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
29
liver
147
82
1
bone tissue
58
left cardiac atrium
40
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