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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
89
ChIP-seq
3
small RNA-seq
Assay category
152
Transcription
89
DNA binding
DNA accessibility
Target of assay
50
histone modification
49
histone
39
transcription factor
36
narrow histone mark
13
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
170
May, 2020
36
December, 2017
17
August, 2017
7
July, 2019
6
October, 2019
4
November, 2018
1
March, 2020
Available data
284
bam
241
bigWig
154
tsv
89
bed narrowPeak
79
fastq
70
tagAlign
45
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
241
Homo sapiens
Biosample type
332
cell line
241
tissue
14
in vitro differentiated cells
9
primary cell
Organ
475
connective tissue
417
adipose tissue
357
pancreas
241
liver
172
brain
126
heart
62
blood vessel
62
vasculature
58
bone element
53
limb
28
nerve
24
musculature of body
22
kidney
21
artery
14
spleen
1
pituitary gland
Project
241
AMP
Genome assembly (visualization)
241
hg19
233
GRCh38
Lab
241
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
241 results
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total RNA-seq
ChIP-seq
small RNA-seq
tissue
liver
147
82
1
right lobe of liver
2
7
2
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