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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
DNA accessibility
14
DNA binding
6
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
8
June, 2019
6
May, 2019
5
July, 2019
2
March, 2020
Available data
34
bigWig
27
bed narrowPeak
24
bam
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
21
Homo sapiens
Biosample type
11
tissue
10
primary cell
Organ
558
pancreas
554
liver
551
connective tissue
418
adipose tissue
244
epithelium
186
heart
136
vasculature
133
blood vessel
105
brain
75
artery
58
bone element
54
blood
54
bodily fluid
53
limb
51
kidney
29
embryo
28
nerve
21
musculature of body
14
spleen
12
vein
2
eye
1
pericardium
Project
21
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
21
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
muscle of leg
6
1
psoas muscle
2
skeletal muscle tissue
1
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
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