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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
19
DNA binding
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
5
October, 2018
Available data
437
bam
419
bigWig
401
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
419
Homo sapiens
Biosample type
417
tissue
2
primary cell
Organ
596
liver
552
connective tissue
541
pancreas
419
adipose tissue
237
epithelium
190
heart
187
brain
140
vasculature
137
blood vessel
79
artery
58
bone element
54
blood
54
bodily fluid
53
limb
51
kidney
34
musculature of body
29
embryo
28
nerve
14
spleen
12
vein
2
eye
1
pericardium
1
pituitary gland
Project
419
AMP
Genome assembly (visualization)
418
GRCh38
417
hg19
Lab
419
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
month_released!
November, 2019
BIOSAMPLE
ASSAY
419 results
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total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
white adipose tissue
12
subcutaneous adipose tissue
6
2
1
omental fat pad
4
3
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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