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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
94
ChIP-seq
16
WGBS
16
small RNA-seq
Assay category
917
Transcription
DNA accessibility
94
DNA binding
16
DNA methylation
Target of assay
522
histone modification
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
143
May, 2020
116
July, 2018
115
August, 2017
55
July, 2019
38
May, 2021
31
December, 2017
19
November, 2019
15
October, 2018
13
November, 2018
8
October, 2019
7
March, 2020
6
April, 2018
5
April, 2019
5
May, 2024
4
May, 2019
3
December, 2018
Available data
1197
bam
1075
tsv
1027
bigWig
263
fastq
156
txt
76
bed narrowPeak
65
bigBed narrowPeak
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
16
bed bed3+
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1027
Homo sapiens
Biosample type
1027
tissue
480
cell line
275
primary cell
168
in vitro differentiated cells
1
stem cell
Organ
473
connective tissue
415
adipose tissue
292
pancreas
192
liver
58
bone element
31
heart
9
brain
8
blood vessel
8
spleen
8
vasculature
5
limb
5
musculature of body
4
nerve
2
kidney
1
artery
Project
1027
AMP
Genome assembly (visualization)
1027
GRCh38
1006
hg19
Lab
1022
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
Audit category:
18
missing controlled_by
assay_slims!
DNA accessibility
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1027 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
2
islet of Langerhans
266
7
liver
147
38
1
bone tissue
58
body of pancreas
2
9
2
2
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