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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
9
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
11
DNA accessibility
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
270
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
77
July, 2019
73
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
80
bigWig
73
bam
65
tsv
41
fastq
19
zippedFastqFolder
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
80
Homo sapiens
Biosample type
55
tissue
25
primary cell
Organ
17
connective tissue
16
brain
15
heart
12
adipose tissue
10
epithelium
9
blood vessel
9
vasculature
8
liver
7
kidney
7
pancreas
4
musculature of body
3
artery
1
pericardium
Project
77
AMP
3
HPAP
Genome assembly (visualization)
76
hg19
74
GRCh38
Lab
77
AMP-T2D consortium
3
Klaus Kaestner, Upenn
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart left ventricle
2
2
right lobe of liver
2
2
+ See 17 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 16 more…
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