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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
89
total RNA-seq
4
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
157
DNA binding
89
Transcription
7
DNA accessibility
DNA methylation
Target of assay
109
histone modification
108
histone
55
broad histone mark
52
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
525
February, 2021
328
November, 2017
294
May, 2021
260
May, 2020
253
August, 2017
192
June, 2019
182
October, 2019
131
July, 2018
93
May, 2019
73
November, 2018
70
July, 2019
65
April, 2019
56
December, 2017
45
October, 2018
44
August, 2021
40
May, 2024
31
February, 2018
30
December, 2018
26
January, 2019
20
May, 2022
19
November, 2019
16
April, 2018
15
March, 2020
14
October, 2017
11
September, 2018
8
January, 2018
5
November, 2020
3
February, 2023
2
June, 2018
Available data
253
bigWig
251
bam
250
fastq
125
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
Organism
247
Homo sapiens
Biosample type
176
tissue
48
in vitro differentiated cells
29
primary cell
Organ
159
pancreas
63
connective tissue
18
liver
epithelium
15
adipose tissue
13
musculature of body
Project
253
AMP
Genome assembly (visualization)
253
hg19
228
GRCh38
Lab
253
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
organ_slims!
epithelium
BIOSAMPLE
ASSAY
253 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
See all biosamples
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