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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
17
DNase-seq
1
FAIRE-seq
Assay category
146
Transcription
101
DNA binding
52
DNA accessibility
2
3D chromatin structure
Date released
14
June, 2019
14
September, 2018
7
August, 2020
5
September, 2017
4
October, 2019
3
August, 2017
3
September, 2020
2
March, 2020
Available data
54
bed narrowPeak
52
bigWig
42
bam
40
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
1
tar
1
tsv
Organism
52
Homo sapiens
Biosample type
49
primary cell
3
cell line
Organ
80
kidney
52
epithelium
51
pancreas
38
limb
35
brain
34
heart
34
musculature of body
26
liver
18
connective tissue
18
ureter
15
vasculature
13
blood vessel
6
adipose tissue
6
artery
4
eye
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
42
AMP
10
HPAP
Genome assembly (visualization)
49
GRCh38
36
hg19
Lab
42
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
52 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
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cell line
EndoC_BH1
2
glomerular visceral epithelial cell
1
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