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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
24
ChIP-seq
5
total RNA-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
79
DNA accessibility
24
DNA binding
6
Transcription
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
80
June, 2019
October, 2019
18
April, 2019
7
July, 2019
4
May, 2019
Available data
167
bed narrowPeak
116
bam
109
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
hic
Organism
109
Homo sapiens
Biosample type
89
tissue
20
primary cell
Organ
615
liver
611
pancreas
565
connective tissue
422
adipose tissue
276
epithelium
211
heart
146
brain
118
vasculature
113
blood vessel
109
kidney
67
musculature of body
64
artery
58
bone element
55
blood
55
bodily fluid
38
limb
29
embryo
18
ureter
14
spleen
6
eye
1
pericardium
Project
109
AMP
Genome assembly (visualization)
108
GRCh38
102
hg19
Lab
109
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_slims!
DNA methylation
month_released!
October, 2019
BIOSAMPLE
ASSAY
109 results
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DNase-seq
ChIP-seq
total RNA-seq
FAIRE-seq
small RNA-seq
tissue
kidney
13
18
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
primary cell
kidney epithelial cell
1
4
1
epithelial cell of proximal tubule
1
2
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 3 more…
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