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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
43
ATAC-seq
4
FAIRE-seq
Assay category
917
Transcription
575
DNA binding
224
DNA accessibility
16
DNA methylation
Date released
163
June, 2019
20
May, 2022
10
November, 2018
8
July, 2019
8
October, 2017
7
October, 2019
4
August, 2017
2
January, 2018
2
March, 2020
Available data
389
bed narrowPeak
245
bam
224
bigWig
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
tsv
1
txt
Organism
224
Homo sapiens
Biosample type
224
tissue
108
primary cell
13
in vitro differentiated cells
5
cell line
Organ
69
kidney
38
limb
33
musculature of body
31
heart
30
brain
24
liver
18
ureter
16
pancreas
8
blood vessel
8
vasculature
6
adipose tissue
6
artery
6
connective tissue
3
eye
3
nerve
2
spleen
Project
224
AMP
Genome assembly (visualization)
206
hg19
195
GRCh38
Lab
203
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
224 results
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DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
2
20
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
body of pancreas
4
4
heart left ventricle
3
2
islet of Langerhans
1
3
1
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
coronary artery
2
1
frontal cortex
2
1
omental fat pad
2
1
pancreas
2
1
retina
3
right atrium auricular region
2
1
right renal cortex interstitium
3
tibial artery
2
1
tibial nerve
2
1
adipose tissue
2
cerebellum (Hemisphere)
1
1
right lobe of liver
1
1
spleen
1
1
Ammon's horn
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
forelimb muscle
1
globus pallidus
1
heart right ventricle
1
hindlimb muscle
1
inferior parietal cortex
1
left cardiac atrium
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
pons
1
posterior cingulate cortex
1
putamen
1
skeletal muscle tissue
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
1
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