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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
115
ChIP-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
115
DNA binding
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
47
August, 2017
34
December, 2017
16
February, 2018
13
August, 2021
5
May, 2021
Available data
146
bam
120
fastq
115
bigWig
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
115
Homo sapiens
Biosample type
575
tissue
411
cell line
247
primary cell
115
in vitro differentiated cells
2
stem cell
Organ
47
connective tissue
18
epithelium
14
embryo
14
liver
2
pancreas
Project
115
AMP
Genome assembly (visualization)
115
GRCh38
114
hg19
Lab
115
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
in vitro differentiated cells
adipocyte
47
hepatocyte
14
neural progenitor cell
13
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
Posterior foregut
4
cardiomyocytes
3
Hepatic endoderm
2
embryonic stem cell
2
endocrine cell
2
pancreatic PP cell
2
posterior foregut
2
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