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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1350
ChIP-seq
1284
total RNA-seq
209
DNase-seq
136
ATAC-seq
100
single cell RNA-seq
18
small RNA-seq
17
WGBS
5
FAIRE-seq
5
GRO-seq
5
Hi-C
Assay category
100
Transcription
17
DNA methylation
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
11
July, 2019
7
November, 2018
3
August, 2018
3
June, 2018
2
August, 2017
Available data
211
tsv
145
fastq
118
bam
117
bigWig
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
8
csv
Organism
117
Homo sapiens
Biosample type
100
primary cell
16
tissue
1
cell line
Organ
78
pancreas
70
epithelium
6
connective tissue
6
heart
3
brain
2
adipose tissue
2
spleen
1
blood vessel
1
limb
1
liver
1
musculature of body
1
vasculature
Project
117
AMP
Genome assembly (visualization)
117
GRCh38
100
hg19
Lab
117
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
BIOSAMPLE
ASSAY
117 results
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single cell RNA-seq
WGBS
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 13 more…
tissue
adipose tissue
2
body of pancreas
2
heart left ventricle
2
heart right ventricle
2
pancreas
2
+ See 5 more…
cell line
HepG2
1
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