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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1390
ChIP-seq
1284
total RNA-seq
209
DNase-seq
136
ATAC-seq
100
single cell RNA-seq
18
small RNA-seq
17
WGBS
5
FAIRE-seq
5
GRO-seq
5
Hi-C
Assay category
118
Transcription
17
DNA methylation
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
29
July, 2019
7
November, 2018
3
August, 2018
3
June, 2018
2
August, 2017
Available data
229
tsv
145
fastq
136
bam
135
bigWig
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
8
csv
Organism
135
Homo sapiens
Biosample type
102
primary cell
32
tissue
1
cell line
Organ
80
pancreas
70
epithelium
9
connective tissue
7
brain
7
heart
5
adipose tissue
4
liver
3
musculature of body
2
spleen
1
blood vessel
1
kidney
1
limb
1
vasculature
Project
135
AMP
Genome assembly (visualization)
135
GRCh38
118
hg19
Lab
135
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
BIOSAMPLE
ASSAY
135 results
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single cell RNA-seq
small RNA-seq
WGBS
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 15 more…
tissue
body of pancreas
2
2
adipose tissue
2
heart
1
1
heart left ventricle
2
heart right ventricle
2
+ See 17 more…
cell line
HepG2
1
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