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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
33
ATAC-seq
27
DNase-seq
2
small RNA-seq
Assay category
252
Transcription
207
DNA binding
60
DNA accessibility
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
136
May, 2021
72
September, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
20
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
525
bam
519
bigWig
261
bed narrowPeak
252
tsv
229
fastq
105
bigBed narrowPeak
98
tagAlign
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
1
bed bed3
1
hic
Organism
519
Homo sapiens
Biosample type
1672
tissue
519
primary cell
454
cell line
243
in vitro differentiated cells
2
stem cell
Organ
224
epithelium
192
pancreas
31
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
musculature of body
10
heart
10
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
329
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
596
hg19
519
GRCh38
Lab
329
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
519 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
primary cell
monocyte
84
53
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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