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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
47
ChIP-seq
7
ATAC-seq
7
single cell RNA-seq
5
Hi-C
4
DNase-seq
Assay category
134
Transcription
47
DNA binding
11
DNA accessibility
5
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
14
transcription factor
7
recombinant protein
4
RNA binding protein
Date released
73
May, 2021
44
February, 2021
22
June, 2019
16
October, 2019
13
November, 2019
9
March, 2020
8
May, 2020
6
July, 2018
2
December, 2017
2
May, 2019
1
February, 2023
1
June, 2018
Available data
212
bam
192
bigWig
150
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
197
Homo sapiens
Biosample type
97
in vitro differentiated cells
59
cell line
38
primary cell
3
tissue
Organ
58
epithelium
54
pancreas
15
kidney
10
connective tissue
8
musculature of body
4
embryo
4
heart
2
brain
1
limb
1
vasculature
Project
189
AMP
8
T1D
Genome assembly (visualization)
197
hg19
185
GRCh38
Lab
192
AMP-T2D consortium
4
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
197
inconsistent ontology term
28
inconsistent control
4
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
197 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
Hepatic endoderm
2
lymphocyte of B lineage (iPSC)
1
1
+ See 6 more…
cell line
EndoC_BH1
33
13
2
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 HIF2a over-expression
1
2
RCC 7860 vector
1
2
primary cell
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
3
1
central memory CD8-positive, alpha-beta T cell
2
2
naive B cel
2
2
+ See 7 more…
tissue
brodmann area 43
1
insular gyrus
1
muscle of leg
1
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