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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
399
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
345
transcription factor
88
recombinant protein
61
RNA binding protein
36
histone
36
histone modification
24
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
258
November, 2017
83
February, 2021
55
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
569
bam
510
bigWig
414
fastq
392
bed narrowPeak
343
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
510
Homo sapiens
Biosample type
1747
tissue
564
primary cell
510
cell line
254
in vitro differentiated cells
3
stem cell
Organ
320
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
506
AMP
4
T1D
Genome assembly (visualization)
505
hg19
449
GRCh38
Lab
496
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
21
inconsistent control read length
2
inconsistent control run_type
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2020
BIOSAMPLE
ASSAY
510 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
314
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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