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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
92
ChIP-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
127
Transcription
92
DNA binding
13
DNA accessibility
Target of assay
64
histone
64
histone modification
32
narrow histone mark
31
broad histone mark
28
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
43
August, 2017
34
December, 2017
31
February, 2018
22
February, 2021
9
August, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
285
bam
254
bigWig
135
fastq
132
bed narrowPeak
131
tsv
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
236
Homo sapiens
Biosample type
1606
tissue
493
cell line
470
primary cell
236
in vitro differentiated cells
3
stem cell
Organ
52
connective tissue
21
embryo
18
epithelium
14
liver
1
heart
Project
236
AMP
Genome assembly (visualization)
232
hg19
220
GRCh38
4
hg18
Lab
226
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
90
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
236 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
4
42
3
1
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
12
1
hepatocyte
14
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