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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
70
ChIP-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
127
Transcription
70
DNA binding
13
DNA accessibility
Target of assay
78
histone
78
histone modification
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
88
May, 2021
31
August, 2017
23
February, 2018
22
December, 2017
22
February, 2021
15
August, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
245
bam
214
bigWig
131
tsv
103
fastq
92
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
214
Homo sapiens
Biosample type
1483
tissue
492
cell line
480
primary cell
214
in vitro differentiated cells
2
stem cell
Organ
40
connective tissue
14
embryo
12
epithelium
9
liver
1
heart
1
pancreas
Project
214
AMP
Genome assembly (visualization)
209
hg19
198
GRCh38
4
hg18
Lab
204
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
91
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
15
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
214 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
30
3
1
cardiac precursors (cardiac muscle cell)
19
neural progenitor cell
7
6
pancreatic endoderm
4
7
1
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