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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
Assay category
72
DNA binding
Target of assay
48
histone
48
histone modification
25
narrow histone mark
24
transcription factor
23
broad histone mark
6
chromatin remodeller
2
RNA binding protein
Date released
32
September, 2018
25
August, 2017
10
November, 2017
3
October, 2017
2
November, 2018
Available data
89
fastq
88
bam
86
bigWig
48
bed narrowPeak
15
bigBed narrowPeak
bed bed3+
4
tagAlign
2
bed broadPeak
Organism
72
Homo sapiens
Biosample type
44
primary cell
12
cell line
11
tissue
5
in vitro differentiated cells
Organ
44
pancreas
21
epithelium
13
connective tissue
12
liver
8
adipose tissue
3
brain
Project
72
AMP
Genome assembly (visualization)
72
hg19
65
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
72
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
HepG2
12
tissue
white adipose tissue
8
brain
3
in vitro differentiated cells
adipocyte
5
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