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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
31
ATAC-seq
2
total RNA-seq
Assay category
47
DNA binding
31
DNA accessibility
2
Transcription
Target of assay
33
histone
33
histone modification
21
broad histone mark
12
narrow histone mark
11
transcription factor
3
control
1
RNA binding protein
Date released
40
May, 2021
20
May, 2022
16
August, 2021
3
February, 2023
1
October, 2017
Available data
150
bed narrowPeak
80
bigWig
66
txt
64
xls
26
fastq
25
bam
10
tsv
4
bed bed3+
3
bed bedgraph
3
hic
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
80
Homo sapiens
Biosample type
35
primary cell
21
tissue
14
cell line
10
in vitro differentiated cells
Organ
34
liver
2
connective tissue
1
pancreas
Project
180
T1D
80
AMP
10
HPAP
Genome assembly (visualization)
80
hg19
1
GRCh38
Lab
AMP-T2D consortium
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
33
2
tissue
liver
20
islet of Langerhans
1
cell line
HepG2
14
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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