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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
Assay category
1298
Transcription
71
DNA accessibility
47
DNA binding
16
DNA methylation
4
3D chromatin structure
Target of assay
23
transcription factor
17
histone
17
histone modification
10
narrow histone mark
7
broad histone mark
7
control
1
RNA binding protein
Date released
39
August, 2017
3
May, 2021
3
November, 2017
2
October, 2019
Available data
1113
bam
979
bigWig
bed narrowPeak
448
bigBed narrowPeak
437
fastq
378
tagAlign
56
bed broadPeak
53
bed bed3+
21
bigBed broadPeak
1
tagAlign bed3+
Organism
47
Homo sapiens
Biosample type
21
primary cell
21
tissue
cell line
5
in vitro differentiated cells
Organ
21
pancreas
17
connective tissue
12
adipose tissue
4
epithelium
4
vasculature
3
blood vessel
3
brain
2
vein
Project
47
AMP
Genome assembly (visualization)
47
hg19
38
GRCh38
Lab
44
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
38
missing controlled_by
biosample_type!
cell line
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
3
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 2 more…
tissue
white adipose tissue
12
islet of Langerhans
9
in vitro differentiated cells
adipocyte
5
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