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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
18
ChIP-seq
12
ATAC-seq
Assay category
112
Transcription
18
DNA binding
12
DNA accessibility
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
4
transcription factor
Date released
89
May, 2021
22
August, 2021
22
February, 2021
4
October, 2019
3
February, 2023
2
March, 2020
Available data
291
bam
259
bigWig
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
1493
tissue
378
primary cell
cell line
142
in vitro differentiated cells
Organ
9
connective tissue
4
epithelium
2
embryo
2
pancreas
1
heart
Project
142
AMP
Genome assembly (visualization)
141
hg19
130
GRCh38
Lab
132
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
91
inconsistent ontology term
biosample_type!
cell line
files.file_type!
fastq
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
adipocyte
4
3
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