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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
36
DNase-seq
4
total RNA-seq
2
ATAC-seq
1
WGBS
Assay category
48
DNA binding
38
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
48
histone
48
histone modification
34
broad histone mark
14
narrow histone mark
Date released
52
October, 2019
32
June, 2019
6
May, 2019
1
July, 2019
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
91
Homo sapiens
Biosample type
91
tissue
Organ
569
connective tissue
567
pancreas
425
adipose tissue
289
liver
249
epithelium
219
brain
168
heart
119
kidney
97
vasculature
92
blood vessel
91
limb
68
musculature of body
58
bone element
31
nerve
29
artery
21
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
91
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
files.file_type!
hdf5
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
tissue
tibial nerve
24
2
4
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
forelimb muscle
1
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