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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
32
ChIP-seq
7
total RNA-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
79
DNA accessibility
32
DNA binding
8
Transcription
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
80
June, 2019
18
April, 2019
10
October, 2019
7
July, 2019
4
May, 2019
Available data
175
bed narrowPeak
129
bam
119
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
119
Homo sapiens
Biosample type
91
tissue
28
primary cell
cell line
Organ
570
connective tissue
567
pancreas
425
adipose tissue
290
liver
251
epithelium
222
brain
168
heart
119
kidney
99
vasculature
94
blood vessel
91
limb
68
musculature of body
58
bone element
31
nerve
29
artery
21
embryo
18
ureter
16
spleen
15
vein
eye
1
pericardium
1
pituitary gland
Project
119
AMP
Genome assembly (visualization)
118
GRCh38
112
hg19
Lab
119
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
organ_slims!
eye
BIOSAMPLE
ASSAY
119 results
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DNase-seq
ChIP-seq
total RNA-seq
FAIRE-seq
small RNA-seq
tissue
kidney
13
20
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
primary cell
epithelial cell of proximal tubule
1
8
1
kidney epithelial cell
1
4
1
kidney tubule cell
2
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
+ See 3 more…
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