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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
106
ChIP-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
Assay category
157
Transcription
106
DNA binding
26
DNA accessibility
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
43
narrow histone mark
41
transcription factor
21
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
170
May, 2020
50
December, 2017
20
May, 2022
18
August, 2017
8
July, 2019
7
November, 2018
6
October, 2019
5
December, 2019
3
August, 2021
2
June, 2019
1
March, 2020
Available data
315
bam
290
bigWig
159
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
290
Homo sapiens
Biosample type
cell line
265
tissue
14
in vitro differentiated cells
11
primary cell
Organ
570
connective tissue
567
pancreas
425
adipose tissue
290
liver
251
epithelium
222
brain
128
heart
119
kidney
99
vasculature
94
blood vessel
91
limb
68
musculature of body
58
bone element
31
nerve
29
artery
21
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
290
AMP
Genome assembly (visualization)
290
hg19
261
GRCh38
Lab
270
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
290 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
tissue
liver
147
82
20
2
1
right lobe of liver
2
7
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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