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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
98
ChIP-seq
5
DNase-seq
3
small RNA-seq
1
ATAC-seq
Assay category
157
Transcription
98
DNA binding
6
DNA accessibility
Target of assay
57
histone modification
56
histone
41
transcription factor
35
narrow histone mark
21
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
162
May, 2020
50
December, 2017
18
August, 2017
7
July, 2019
7
November, 2018
6
October, 2019
5
December, 2019
3
August, 2021
2
June, 2019
1
March, 2020
Available data
263
bam
261
bigWig
157
tsv
105
bed narrowPeak
76
fastq
65
bigBed narrowPeak
22
tagAlign
11
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
Organism
261
Homo sapiens
Biosample type
cell line
237
tissue
14
in vitro differentiated cells
10
primary cell
Organ
562
connective tissue
557
pancreas
422
adipose tissue
261
liver
244
epithelium
214
brain
167
heart
118
kidney
92
vasculature
90
limb
88
blood vessel
58
bone element
53
musculature of body
31
nerve
29
artery
20
embryo
18
ureter
16
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
Project
261
AMP
Genome assembly (visualization)
290
hg19
261
GRCh38
Lab
261
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
261 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
tissue
liver
147
74
2
1
right lobe of liver
2
7
1
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
1
hepatic stellate cell
1
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