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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
5
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
17
DNA binding
5
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
14
December, 2017
5
December, 2019
3
August, 2021
2
June, 2019
1
July, 2019
Available data
27
bam
25
bigWig
20
bed narrowPeak
16
bigBed narrowPeak
15
fastq
6
bed bed3+
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
25
Homo sapiens
Biosample type
cell line
tissue
14
in vitro differentiated cells
11
primary cell
Organ
251
epithelium
194
pancreas
89
connective tissue
29
vasculature
28
kidney
25
liver
24
blood vessel
21
embryo
20
brain
15
vein
11
heart
11
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
25
AMP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
25
AMP-T2D consortium
biosample_type!
cell line
tissue
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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