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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
106
ChIP-seq
21
ATAC-seq
3
small RNA-seq
1
Hi-C
Assay category
157
Transcription
106
DNA binding
21
DNA accessibility
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
43
narrow histone mark
41
transcription factor
21
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
170
May, 2020
50
December, 2017
20
May, 2022
18
August, 2017
8
July, 2019
6
October, 2019
5
December, 2019
4
November, 2018
3
August, 2021
1
March, 2020
Available data
315
bam
290
bigWig
159
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
285
Homo sapiens
Biosample type
cell line
262
tissue
14
in vitro differentiated cells
9
primary cell
Organ
561
connective tissue
561
pancreas
423
adipose tissue
285
liver
229
epithelium
184
brain
138
heart
82
vasculature
81
blood vessel
58
bone element
55
limb
41
kidney
35
musculature of body
29
nerve
25
artery
21
embryo
15
spleen
11
vein
2
eye
1
pericardium
1
pituitary gland
Project
285
AMP
Genome assembly (visualization)
285
hg19
256
GRCh38
Lab
265
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
biosample_type!
cell line
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
285 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
tissue
liver
147
82
20
1
right lobe of liver
2
7
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
endothelial cell of hepatic sinusoid
1
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