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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
41
ChIP-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
Assay category
157
Transcription
41
DNA binding
26
DNA accessibility
1
3D chromatin structure
Target of assay
histone modification
64
histone
43
narrow histone mark
41
transcription factor
21
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
143
May, 2020
33
December, 2017
20
May, 2022
8
July, 2019
7
November, 2018
5
August, 2017
5
December, 2019
2
June, 2019
1
March, 2020
1
October, 2019
Available data
250
bam
225
bigWig
159
tsv
68
bed narrowPeak
68
fastq
43
bigBed narrowPeak
27
tagAlign
9
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
225
Homo sapiens
Biosample type
cell line
215
tissue
8
primary cell
2
in vitro differentiated cells
Organ
535
connective tissue
443
pancreas
423
adipose tissue
225
liver
173
epithelium
89
kidney
71
heart
58
bone element
56
brain
43
limb
41
musculature of body
31
vasculature
27
blood vessel
18
ureter
10
embryo
10
spleen
9
artery
7
nerve
5
eye
3
vein
1
pericardium
Project
225
AMP
Genome assembly (visualization)
225
hg19
204
GRCh38
Lab
205
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
biosample_type!
cell line
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
225 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
tissue
liver
147
37
20
2
1
right lobe of liver
2
2
1
1
2
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
2
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