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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
63
ChIP-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
Assay category
157
Transcription
63
DNA binding
26
DNA accessibility
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
narrow histone mark
41
transcription factor
21
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
143
May, 2020
43
December, 2017
20
May, 2022
13
August, 2017
8
July, 2019
7
November, 2018
5
December, 2019
4
October, 2019
2
June, 2019
1
August, 2021
1
March, 2020
Available data
272
bam
247
bigWig
159
tsv
90
bed narrowPeak
86
fastq
57
bigBed narrowPeak
39
tagAlign
10
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
247
Homo sapiens
Biosample type
cell line
229
tissue
9
in vitro differentiated cells
9
primary cell
Organ
552
connective tissue
507
pancreas
423
adipose tissue
247
liver
209
epithelium
128
heart
116
brain
104
kidney
77
limb
74
vasculature
70
blood vessel
58
bone element
57
musculature of body
23
artery
23
nerve
18
ureter
14
embryo
14
spleen
10
vein
5
eye
1
pericardium
Project
247
AMP
Genome assembly (visualization)
247
hg19
226
GRCh38
Lab
227
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
biosample_type!
cell line
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
247 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
tissue
liver
147
48
20
2
1
right lobe of liver
2
5
1
1
2
in vitro differentiated cells
hepatocyte
9
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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