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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
74
total RNA-seq
70
single cell RNA-seq
34
ATAC-seq
17
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
144
Transcription
83
DNA binding
52
DNA accessibility
2
3D chromatin structure
Target of assay
75
histone
75
histone modification
40
narrow histone mark
35
broad histone mark
6
RNA binding protein
6
transcription factor
2
control
Date released
61
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
25
October, 2019
18
June, 2019
17
August, 2017
12
November, 2019
7
August, 2020
7
July, 2019
6
November, 2017
5
December, 2019
5
March, 2020
5
May, 2021
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
September, 2020
2
October, 2018
1
June, 2018
Available data
293
bam
281
bigWig
238
fastq
154
tsv
133
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
281
Homo sapiens
Biosample type
231
primary cell
50
cell line
in vitro differentiated cells
Organ
621
pancreas
608
liver
513
connective tissue
425
adipose tissue
281
epithelium
222
brain
183
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
18
ureter
16
spleen
15
vein
8
embryo
6
eye
1
pericardium
1
pituitary gland
Project
267
AMP
10
HPAP
4
T1D
Genome assembly (visualization)
272
GRCh38
265
hg19
Lab
271
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
54
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
endothelial cell of umbilical vein
12
2
1
+ See 18 more…
cell line
EndoC_BH1
13
33
2
glomerular visceral epithelial cell
1
1
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